initial commit

mne_data/MNE-sample-data/subjects/fsaverage/scripts/recon-all.env.bak

@@ -0,0 +1,129 @@
+Thu Dec 30 17:34:43 EST 2010
+FREESURFER_HOME /usr/local/freesurfer/stable5
+Actual FREESURFER_HOME /autofs/cluster/freesurfer/centos4.0_x86_64/stable5
+/autofs/cluster/freesurfer/subjects/fsaverage
+setenv SUBJECTS_DIR /autofs/cluster/freesurfer/subjects
+-s fsaverage -cortparc
+Linux terrier 2.6.18-194.8.1.el5 #1 SMP Thu Jul 1 19:04:48 EDT 2010 x86_64 x86_64 x86_64 GNU/Linux
+
+cputime      unlimited
+filesize     unlimited
+datasize     unlimited
+stacksize    10240 kbytes
+coredumpsize 0 kbytes
+memoryuse    unlimited
+vmemoryuse   unlimited
+descriptors  1024 
+memorylocked 32 kbytes
+maxproc      201728 
+
+SSH_AGENT_PID=6065
+HOSTNAME=terrier
+HOST=terrier
+TERM=xterm
+SHELL=/usr/local/bin/tcsh
+QTDIR=/usr/lib64/qt-3.3
+QTINC=/usr/lib64/qt-3.3/include
+PATHSET=1
+GROUP=nicks
+USER=nicks
+LS_COLORS=no=00:fi=00:di=01;34:ln=01;36:pi=40;33:so=01;35:bd=40;33;01:cd=40;33;01:or=01;05;37;41:mi=01;05;37;41:ex=01;32:*.cmd=01;32:*.exe=01;32:*.com=01;32:*.btm=01;32:*.bat=01;32:*.sh=01;32:*.csh=01;32:*.tar=01;31:*.tgz=01;31:*.arj=01;31:*.taz=01;31:*.lzh=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.gz=01;31:*.bz2=01;31:*.bz=01;31:*.tz=01;31:*.rpm=01;31:*.cpio=01;31:*.jpg=01;35:*.gif=01;35:*.bmp=01;35:*.xbm=01;35:*.xpm=01;35:*.png=01;35:*.tif=01;35:*.dmg=01;31:
+OPENWINHOME=/usr/openwin
+HOSTTYPE=x86_64-linux
+SSH_AUTH_SOCK=/tmp/ssh-ntSizn6022/agent.6022
+KDEDIR=/usr
+USERNAME=nicks
+HELPPATH=/usr/openwin/lib/help
+MAIL=/var/spool/mail/nicks
+PATH=/usr/pubsw/packages/AFNI/current/bin:/usr/local/freesurfer/stable5/bin:/usr/local/freesurfer/stable5/fsfast/bin:/usr/pubsw/packages/fsl/current/bin:/autofs/space/terrier_001/users/nicks/freesurfer/mni/bin:/usr/pubsw/packages/valgrind/current/bin:/usr/local/cula/bin64/:/usr/local/cuda/bin/:/autofs/space/terrier_001/users/nicks/freesurfer/bin:/autofs/space/terrier_001/users/nicks/freesurfer/fsfast/bin:/usr/pubsw/packages/fsl/current/bin:/autofs/space/terrier_001/users/nicks/freesurfer/mni/bin:/usr/pubsw/packages/tcltktixblt/current/bin/:/usr/pubsw/packages/cmake/current/bin:/homes/11/nicks/bin:/homes/11/nicks/bin/sloc_count:/usr/bin:/usr/local/bin:/usr/lib64/qt-3.3/bin:/usr/kerberos/bin:/usr/java/current/bin:/usr/local/bin:/usr/bin:/bin:/usr/X11R6/bin:/usr/pubsw/bin:/usr/pubsw/packages/caret/current/bin
+DESKTOP_SESSION=default
+GDM_XSERVER_LOCATION=local
+INPUTRC=/etc/inputrc
+PWD=/autofs/cluster/freesurfer/subjects/fsaverage
+XMODIFIERS=@im=none
+KDE_IS_PRELINKED=1
+LANG=C
+GDMSESSION=default
+SSH_ASKPASS=/usr/libexec/openssh/gnome-ssh-askpass
+SHLVL=3
+HOME=/homes/11/nicks
+OSTYPE=linux
+VENDOR=unknown
+MACHTYPE=x86_64
+LOGNAME=nicks
+QTLIB=/usr/lib64/qt-3.3/lib
+DBUS_SESSION_BUS_ADDRESS=unix:abstract=/tmp/dbus-1wHKW0nOde,guid=41a48c9649d362b9c441d3004d1a4b3d
+LESSOPEN=|/usr/bin/lesspipe.sh %s
+DISPLAY=:0.0
+G_BROKEN_FILENAMES=1
+XAUTHORITY=/tmp/.gdmD4GNOV
+GTK_RC_FILES=/etc/gtk/gtkrc:/homes/11/nicks/.gtkrc-1.2-gnome2
+SESSION_MANAGER=local/terrier:/tmp/.ICE-unix/6104
+GNOME_KEYRING_SOCKET=/tmp/keyring-nMAWKq/socket
+GNOME_DESKTOP_SESSION_ID=Default
+DESKTOP_STARTUP_ID=
+COLORTERM=gnome-terminal
+WINDOWID=26341869
+PRINTER=deca
+LPDEST=deca
+EDITOR=emacs
+TERRIER_HOME=/autofs/space/terrier_001/users/nicks
+TERRIER_SD=/autofs/space/terrier_002/users/nicks/subjects
+TINIA_HOME=/autofs/space/tinia_001/users/nicks
+MINERVA_HOME=/autofs/space/minerva_001/users/nicks
+BLADE_HOME=/autofs/space/blade_005/users/nicks
+JC_HOME=/autofs/space/jc_001/users/nicks
+HADES_HOME=/autofs/space/hades_001/users/nicks
+HYDRA_HOME=/local_mount/space/hydra/1/users/nicks
+STORM_HOME=/Users/Shared
+SLEET_HOME=/Users/nicks
+MIST_HOME=/Users/Shared
+ASPASIA_HOME=/Users/Shared/nicks
+RAIN_HOME=/Users/nicks
+FISHIE_HOME=/home/nicks
+ASTERIX_HOME=/autofs/space/asterix_001/users/nicks
+PKGS_ROOT=/autofs/space/terrier_001/users/nicks/pkgs
+SUBJECTS_DIR=/autofs/cluster/freesurfer/subjects
+LD_LIBRARY_PATH=/usr/pubsw/packages/valgrind/current/lib:/usr/local/cula/lib64:/usr/local/cuda/lib:/usr/local/cuda/lib64:/usr/pubsw/packages/cppunit/current/lib
+CMAKE_HOME=/usr/pubsw/packages/cmake/current
+CVSROOT=/space/repo/1/dev
+SVNMNEROOT=/space/orsay/8/users/msh/SVN-MNE/trunk
+MNE_ROOT=/usr/pubsw/packages/mne/current
+MATLAB_ROOT=/usr/pubsw/packages/matlab/current
+FREESURFER_HOME=/usr/local/freesurfer/stable5
+FSDEV=/autofs/space/terrier_001/users/nicks/dev
+FSSTABLE=/autofs/space/terrier_001/users/nicks/stable5/dev
+FUNCTIONALS_DIR=/autofs/space/terrier_001/users/nicks/freesurfer/sessions
+OS=Linux
+FS_OVERRIDE=0
+FSFAST_HOME=/usr/local/freesurfer/stable5/fsfast
+MINC_BIN_DIR=/autofs/space/terrier_001/users/nicks/freesurfer/mni/bin
+MNI_DIR=/autofs/space/terrier_001/users/nicks/freesurfer/mni
+MINC_LIB_DIR=/autofs/space/terrier_001/users/nicks/freesurfer/mni/lib
+MNI_DATAPATH=/autofs/space/terrier_001/users/nicks/freesurfer/mni/data
+FSL_DIR=/usr/pubsw/packages/fsl/current
+LOCAL_DIR=/usr/local/freesurfer/stable5/local
+FSF_OUTPUT_FORMAT=nii
+FMRI_ANALYSIS_DIR=/usr/local/freesurfer/stable5/fsfast
+MNI_PERL5LIB=/autofs/space/terrier_001/users/nicks/freesurfer/mni/lib/perl5/5.8.5
+PERL5LIB=/autofs/space/terrier_001/users/nicks/freesurfer/mni/lib/perl5/5.8.5
+FSLDIR=/usr/pubsw/packages/fsl/current
+FSL_BIN=/usr/pubsw/packages/fsl/current/bin
+FSLOUTPUTTYPE=NIFTI_GZ
+FSLMULTIFILEQUIT=TRUE
+FSLTCLSH=/usr/pubsw/packages/fsl/current/bin/fsltclsh
+FSLWISH=/usr/pubsw/packages/fsl/current/bin/fslwish
+FSLLOCKDIR=
+FSLMACHINELIST=
+FSLREMOTECALL=
+FSLCONFDIR=/usr/pubsw/packages/fsl/current/config
+FSLMACHTYPE=linux_64-gcc4.1
+FSLDISPLAY=/usr/bin/display
+FSLCONVERT=/usr/bin/convert
+FIX_VERTEX_AREA=
+NVIDIA_CUDA_SDK=/usr/local/cuda/sdk
+CARET_HOME=/usr/pubsw/packages/caret/current
+SET_TCL_VARS=1
+MRI_UMASK=2
+RECONALL_USAGE_FILE=/space/freesurfer/recon-all_run_log
+REQUIRE_FS_MATCH=0