functional connectivity, pylance, and other improvements

src/analysis/intragroupstats.py

@@ -268,6 +268,7 @@ class IntraGroupStatsWidget(IntraGroupUIMixin, FlaresBaseWidget):
 
                 run_roi_second_level_analysis(
                     df_roi_all=df_filtered,
+                    condition=selected_event,
                     df_cha_all=all_cha_filtered,
                     raw_haemo=p_haemo,
                     p_threshold=p_threshold,
@@ -382,14 +383,9 @@ class IntraGroupStatsWidget(IntraGroupUIMixin, FlaresBaseWidget):
                           "(check regions.json channel names against this montage).")
                     continue
  
-                # TODO: Come back to this
-                # df_cha_all intentionally omitted (None): the topography
-                # section of run_roi_second_level_analysis expects
-                # single-condition Condition values in df_cha_all, which
-                # doesn't semantically match a contrast name - skip it here
-                # rather than pass mismatched data.
                 run_roi_second_level_analysis(
                     df_roi_all=roi_theta,
+                    condition=contrast_name,
                     df_cha_all=None,
                     raw_haemo=p_haemo,
                     p_threshold=p_threshold,