From 6f9090204ed46d6c962ab9d3b9435cce73a85e05 Mon Sep 17 00:00:00 2001 From: tyler Date: Mon, 17 Aug 2026 23:44:12 -0700 Subject: [PATCH] Update Home --- Home.md | 58 ++++++++++++++++++++++++++++----------------------------- 1 file changed, 29 insertions(+), 29 deletions(-) diff --git a/Home.md b/Home.md index fc0ae67..31f5f98 100644 --- a/Home.md +++ b/Home.md @@ -93,35 +93,35 @@ When files are loaded either from opening a singular file or opening a whole fol ## Parameters ## When performing a fNIRS analysis, these parameters are some of the most important settings and it is crucial that they are correct for the study that is being performed. By default, FLARES exposes most of the parameters needed for an analysis allowing for immense customizability, with some more advanced parameters being hidden behind the `Show Advanced Parameters` preference. These parameters have been broken down into subcategories in an attempt to keep them simple. These parameters are also shown in the order that they will be applied, and logical values have been applied by default. Due to the length of describing each parameter, their descriptions are provided on their own Wiki page that can be found by [clicking this link](https://git.research.dezeeuw.ca/tyler/flares/wiki/Parameters), or by clicking one of their categorical links. Information about the individual parameters can also be found in summary form inside FLARES by clicking the "?" icon next to the respective parameter. Below is the complete list of parameter sections, with sections that have all their parameters marked as advanced or no parameters being labeled with a ⚠️ symbol. This does not mean that the step itself is advanced, but rather that it is simply not visible by default: -- [Preprocessing](#preprocessing) -- [Trimming](#trimming) -- [Verify Optode Placement](#verify-optode-placement) -- [Short/Long Channels](#shortlong-channels) -- [Heart Rate](#heart-rate) -- [Scalp Coupling Index](#scalp-coupling-index) -- [Signal to Noise Ratio](#signal-to-noise-ratio) -- [Peak Spectral Power](#peak-spectral-power) -- [Coefficient of Variation](#coefficient-of-variation) -- [Median Absolute Deviation](#median-absolute-deviation) -- [Power Spectral Density Noise](#power-spectral-density-noise) -- [Sensor Dropout](#sensor-dropout) -- [Bad Channels Handling](#bad-channels-handling) -- [⚠️ Optical Density](#optical-density) -- [Temporal Derivative Distribution Repair filtering](#temporal-derivative-distribution-repair-filtering) -- [Wavelet filtering](#wavelet-filtering) -- [⚠️ Haemoglobin Concentration](#haemoglobin-concentration) -- [Enhance Negative Correlation](#enhance-negative-correlation) -- [Filtering](#filtering) -- [Extracting Events](#extracting-events) -- [Epoch Calculations](#epoch-calculations) -- [Design Matrix](#design-matrix) -- [General Linear Model](#general-linear-model) -- [⚠️ Generate GLM Results] -- [⚠️ Generate Channel Results] -- [Region of Interest](#finishing-touches) -- [⚠️ Generate Contrast Results] -- [⚠️ Finishing Up] -- [Other](#other) +- [Preprocessing](https://git.research.dezeeuw.ca/tyler/flares/wiki/Understanding-Parameters#preprocessing) +- [Trimming](https://git.research.dezeeuw.ca/tyler/flares/wiki/Understanding-Parameters#trimming) +- [Verify Optode Placement](https://git.research.dezeeuw.ca/tyler/flares/wiki/Understanding-Parameters#verify-optode-placement) +- [Short/Long Channels](https://git.research.dezeeuw.ca/tyler/flares/wiki/Understanding-Parameters#shortlong-channels) +- [Heart Rate](https://git.research.dezeeuw.ca/tyler/flares/wiki/Understanding-Parameters#heart-rate) +- [Scalp Coupling Index](https://git.research.dezeeuw.ca/tyler/flares/wiki/Understanding-Parameters#scalp-coupling-index) +- [Signal to Noise Ratio](https://git.research.dezeeuw.ca/tyler/flares/wiki/Understanding-Parameters#signal-to-noise-ratio) +- [Peak Spectral Power](https://git.research.dezeeuw.ca/tyler/flares/wiki/Understanding-Parameters#peak-spectral-power) +- [Coefficient of Variation](https://git.research.dezeeuw.ca/tyler/flares/wiki/Understanding-Parameters#coefficient-of-variation) +- [Median Absolute Deviation](https://git.research.dezeeuw.ca/tyler/flares/wiki/Understanding-Parameters#median-absolute-deviation) +- [Power Spectral Density Noise](https://git.research.dezeeuw.ca/tyler/flares/wiki/Understanding-Parameters#power-spectral-density-noise) +- [Sensor Dropout](https://git.research.dezeeuw.ca/tyler/flares/wiki/Understanding-Parameters#sensor-dropout) +- [Bad Channels Handling](https://git.research.dezeeuw.ca/tyler/flares/wiki/Understanding-Parameters#bad-channels-handling) +- [⚠️ Optical Density](https://git.research.dezeeuw.ca/tyler/flares/wiki/Understanding-Parameters#optical-density) +- [Temporal Derivative Distribution Repair filtering](https://git.research.dezeeuw.ca/tyler/flares/wiki/Understanding-Parameters#temporal-derivative-distribution-repair-filtering) +- [Wavelet filtering](https://git.research.dezeeuw.ca/tyler/flares/wiki/Understanding-Parameters#wavelet-filtering) +- [⚠️ Haemoglobin Concentration](https://git.research.dezeeuw.ca/tyler/flares/wiki/Understanding-Parameters#haemoglobin-concentration) +- [Enhance Negative Correlation](https://git.research.dezeeuw.ca/tyler/flares/wiki/Understanding-Parameters#enhance-negative-correlation) +- [Filtering](https://git.research.dezeeuw.ca/tyler/flares/wiki/Understanding-Parameters#filtering) +- [Extracting Events](https://git.research.dezeeuw.ca/tyler/flares/wiki/Understanding-Parameters#extracting-events) +- [Epoch Calculations](https://git.research.dezeeuw.ca/tyler/flares/wiki/Understanding-Parameters#epoch-calculations) +- [Design Matrix](https://git.research.dezeeuw.ca/tyler/flares/wiki/Understanding-Parameters#design-matrix) +- [General Linear Model](https://git.research.dezeeuw.ca/tyler/flares/wiki/Understanding-Parameters#general-linear-model) +- [⚠️ Generate GLM Results](https://git.research.dezeeuw.ca/tyler/flares/wiki/Understanding-Parameters) +- [⚠️ Generate Channel Results](https://git.research.dezeeuw.ca/tyler/flares/wiki/Understanding-Parameters) +- [Region of Interest](https://git.research.dezeeuw.ca/tyler/flares/wiki/Understanding-Parameters#finishing-touches) +- [⚠️ Generate Contrast Results](https://git.research.dezeeuw.ca/tyler/flares/wiki/Understanding-Parameters) +- [⚠️ Finishing Up](https://git.research.dezeeuw.ca/tyler/flares/wiki/Understanding-Parameters) +- [Other](https://git.research.dezeeuw.ca/tyler/flares/wiki/Understanding-Parameters#other) ## Buttons ## At the bottom of all the parameters, there will be buttons visible that can be pushed that will perform various actions. These buttons include: