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 ## Parameters ##
 When performing a fNIRS analysis, these parameters are some of the most important settings and it is crucial that they are correct for the study that is being performed. By default, FLARES exposes most of the parameters needed for an analysis allowing for immense customizability, with some more advanced parameters being hidden behind the `Show Advanced Parameters` preference. These parameters have been broken down into subcategories in an attempt to keep them simple. These parameters are also shown in the order that they will be applied, and logical values have been applied by default. Due to the length of describing each parameter, their descriptions are provided on their own Wiki page that can be found by [clicking this link](https://git.research.dezeeuw.ca/tyler/flares/wiki/Parameters), or by clicking one of their categorical links. Information about the individual parameters can also be found in summary form inside FLARES by clicking the "?" icon next to the respective parameter. Below is the complete list of parameter sections, with sections that have all their parameters marked as advanced or no parameters being labeled with a ⚠️ symbol. This does not mean that the step itself is advanced, but rather that it is simply not visible by default:
 
-- [Preprocessing](#preprocessing)
+- [Preprocessing](https://git.research.dezeeuw.ca/tyler/flares/wiki/Understanding-Parameters#preprocessing)
-- [Trimming](#trimming)
+- [Trimming](https://git.research.dezeeuw.ca/tyler/flares/wiki/Understanding-Parameters#trimming)
-- [Verify Optode Placement](#verify-optode-placement)
+- [Verify Optode Placement](https://git.research.dezeeuw.ca/tyler/flares/wiki/Understanding-Parameters#verify-optode-placement)
-- [Short/Long Channels](#shortlong-channels)
+- [Short/Long Channels](https://git.research.dezeeuw.ca/tyler/flares/wiki/Understanding-Parameters#shortlong-channels)
-- [Heart Rate](#heart-rate)
+- [Heart Rate](https://git.research.dezeeuw.ca/tyler/flares/wiki/Understanding-Parameters#heart-rate)
-- [Scalp Coupling Index](#scalp-coupling-index)
+- [Scalp Coupling Index](https://git.research.dezeeuw.ca/tyler/flares/wiki/Understanding-Parameters#scalp-coupling-index)
-- [Signal to Noise Ratio](#signal-to-noise-ratio)
+- [Signal to Noise Ratio](https://git.research.dezeeuw.ca/tyler/flares/wiki/Understanding-Parameters#signal-to-noise-ratio)
-- [Peak Spectral Power](#peak-spectral-power)
+- [Peak Spectral Power](https://git.research.dezeeuw.ca/tyler/flares/wiki/Understanding-Parameters#peak-spectral-power)
-- [Coefficient of Variation](#coefficient-of-variation)
+- [Coefficient of Variation](https://git.research.dezeeuw.ca/tyler/flares/wiki/Understanding-Parameters#coefficient-of-variation)
-- [Median Absolute Deviation](#median-absolute-deviation)
+- [Median Absolute Deviation](https://git.research.dezeeuw.ca/tyler/flares/wiki/Understanding-Parameters#median-absolute-deviation)
-- [Power Spectral Density Noise](#power-spectral-density-noise)
+- [Power Spectral Density Noise](https://git.research.dezeeuw.ca/tyler/flares/wiki/Understanding-Parameters#power-spectral-density-noise)
-- [Sensor Dropout](#sensor-dropout)
+- [Sensor Dropout](https://git.research.dezeeuw.ca/tyler/flares/wiki/Understanding-Parameters#sensor-dropout)
-- [Bad Channels Handling](#bad-channels-handling)
+- [Bad Channels Handling](https://git.research.dezeeuw.ca/tyler/flares/wiki/Understanding-Parameters#bad-channels-handling)
-- [⚠️ Optical Density](#optical-density)
+- [⚠️ Optical Density](https://git.research.dezeeuw.ca/tyler/flares/wiki/Understanding-Parameters#optical-density)
-- [Temporal Derivative Distribution Repair filtering](#temporal-derivative-distribution-repair-filtering)
+- [Temporal Derivative Distribution Repair filtering](https://git.research.dezeeuw.ca/tyler/flares/wiki/Understanding-Parameters#temporal-derivative-distribution-repair-filtering)
-- [Wavelet filtering](#wavelet-filtering)
+- [Wavelet filtering](https://git.research.dezeeuw.ca/tyler/flares/wiki/Understanding-Parameters#wavelet-filtering)
-- [⚠️ Haemoglobin Concentration](#haemoglobin-concentration)
+- [⚠️ Haemoglobin Concentration](https://git.research.dezeeuw.ca/tyler/flares/wiki/Understanding-Parameters#haemoglobin-concentration)
-- [Enhance Negative Correlation](#enhance-negative-correlation)
+- [Enhance Negative Correlation](https://git.research.dezeeuw.ca/tyler/flares/wiki/Understanding-Parameters#enhance-negative-correlation)
-- [Filtering](#filtering)
+- [Filtering](https://git.research.dezeeuw.ca/tyler/flares/wiki/Understanding-Parameters#filtering)
-- [Extracting Events](#extracting-events)
+- [Extracting Events](https://git.research.dezeeuw.ca/tyler/flares/wiki/Understanding-Parameters#extracting-events)
-- [Epoch Calculations](#epoch-calculations)
+- [Epoch Calculations](https://git.research.dezeeuw.ca/tyler/flares/wiki/Understanding-Parameters#epoch-calculations)
-- [Design Matrix](#design-matrix)
+- [Design Matrix](https://git.research.dezeeuw.ca/tyler/flares/wiki/Understanding-Parameters#design-matrix)
-- [General Linear Model](#general-linear-model)
+- [General Linear Model](https://git.research.dezeeuw.ca/tyler/flares/wiki/Understanding-Parameters#general-linear-model)
-- [⚠️ Generate GLM Results]
+- [⚠️ Generate GLM Results](https://git.research.dezeeuw.ca/tyler/flares/wiki/Understanding-Parameters)
-- [⚠️ Generate Channel Results]
+- [⚠️ Generate Channel Results](https://git.research.dezeeuw.ca/tyler/flares/wiki/Understanding-Parameters)
-- [Region of Interest](#finishing-touches)
+- [Region of Interest](https://git.research.dezeeuw.ca/tyler/flares/wiki/Understanding-Parameters#finishing-touches)
-- [⚠️ Generate Contrast Results]
+- [⚠️ Generate Contrast Results](https://git.research.dezeeuw.ca/tyler/flares/wiki/Understanding-Parameters)
-- [⚠️ Finishing Up]
+- [⚠️ Finishing Up](https://git.research.dezeeuw.ca/tyler/flares/wiki/Understanding-Parameters)
-- [Other](#other)
+- [Other](https://git.research.dezeeuw.ca/tyler/flares/wiki/Understanding-Parameters#other)
 
 ## Buttons ##
 At the bottom of all the parameters, there will be buttons visible that can be pushed that will perform various actions. These buttons include: