flares/changelog.md

Version 1.1.5

• Fixed Windows saves not being able to be opened by a Mac (hopefully the other way too!)
• Added the option to right click loaded snirf files to reveal them in a file browser or delete them if they are no longer desired
• Changed the way folders are opened to store the files seperately rather than the folder as a whole to allow for the removal of files
• Fixed issues with dropdowns and bubbles not populating correctly when opening a single file and temporarily removed the option to open multiple folders
• Improved crash handling and the message that is displayed to the user if the application crashes
• Progress bar will now colour the stage that fails as red if a file fails during processing
• A warning message will be displayed when a file fails to process with information on what went wrong. This message does not halt the rest of the processing of the other files
• Fixed the number of rectangles in the progress bar to 20 (was incorrect in v1.1.1)
• Added validation to ensure loaded files do not have 2 dimensional data when clicking process to prevent inaccurate results from being generated
• Added more metadata information to the top left information panel
• Changed the Status Bar message when processing is complete to state how many were successful and how many were not
• Added a clickable link below the selected file's metadata explaining the independent parameters and why they are useful
• Updated some tooltips to provide better, more accurate information
• Added details about the processing steps and their order into the user guide
• Changed the default bandpass filtering parameters

Version 1.1.4

• Fixed some display text to now display the correct information
• A new option under Analysis has been added to export the data from a specified participant as a csv file. Fixes Issue 19, Issue 27
• Added 2 new parameters - TIME_WINDOW_START and TIME_WINDOW_END. Fixes Issue 29
• These parameters affect the visualization of the significance and contrast images but do not change the total time modeled underneath
• Fixed the duration of annotations edited from a BORIS file from 0 seconds to their proper duration
• Added the annotation information to each participant under their "File information" window
• Fixed Macs not being able to save snirfs attempting to be updated from BORIS files, and in general the updated files not respecting the path chosen by the user

Version 1.1.3

• Added back the ability to use the fOLD dataset. Fixes Issue 23
• 5th option has been added under Analysis to get to fOLD channels per participant
• Added an option to cancel the running process. Fixes Issue 15
• Prevented graph images from showing when participants are being processed. Fixes Issue 24
• Allow the option to remove all events of a type from all loaded snirfs. Fixes Issue 25
• Added new icons in the menu bar
• Added a terminal to interact with the app in a more command-like form
• Currently the terminal has no functionality but some features for batch operations will be coming soon!
• Inter-Group viewer now has the option to visualize the average response on the brain of all participants in the group. Fixes Issue 26
• Fixed the description under "Update events in snirf file..."

Version 1.1.2

• Fixed incorrect colormaps being applied
• Added functionality to utilize external event markers from a file. Fixes Issue 6

Version 1.1.1

• Fixed the number of rectangles in the progress bar to 19
• Fixed a crash when attempting to load a brain image on Windows
• Removed hardcoded event annotations. Fixes Issue 16

Version 1.1.0

• Revamped the Analysis window
• 4 Options of Participant, Participant Brain, Inter-Group, and Cross Group Brain are available.
• Customization is present to query different participants, images, events, brains, etc.
• Removed preprocessing options and reorganized their order to correlate with the actual order.
• Most preprocessing options removed will be coming back soon
• Added a group option when clicking on a participant's file
• If no group is specified, the participant will be added to the "Default" group
• Added option to update the optode positions in a snirf file from the Options menu (F6)
• Fixed Issue 3, Issue 4, Issue 17, Issue 21, Issue 22

Version 1.0.1

• Two new options have been added when clicking on a participant's file.
• First new option is Age which allows the option to specify age on a per-file basis to calculate DPF by using the Scholkmann & Wolf calculation instead of having one DPF for all files. Fixes Issue 1. This also allows for proper calculation of DPF for the two seperate wavelengths.
• If no age is set by the user, the code will fall back to the age of 25
• Second new option is Gender to be used in future analysis options (currently not implemented).
• UI elements have been shuffled to make room for the new parameters.
• Removed the process button from being available until a file or project is opened. Fixes Issue 2.
• Removed the option for PPF under Haemoglobin Concentration as it is no longer used.
• Added a new category in the options called Other
• Added MAX_WORKERS to the Other category. This is how many files should be processed at once. Fixes Issue 13.
• Added more information about the snirf file to be displayed when selected

Version 1.0.0

• Initial release.